RSEc metadata supports a variety of downstream applications, from workflow catalogues to benchmarking dashboards. Browse the examples below to see how the ecosystem is reused and get inspiration for your own integrations.
Bioconda is a bioinformatics channel for the Conda package manager
Galaxy is an open-source platform that allows researchers to analyze and share scientific data using interoperable APIs and various user-friendly web-based interfaces. Galaxy tools can be annotated with EDAM ontologies, bio.tools IDs and linked to OpenEBench, Conda packages and BioContainers.
This static site web application demonstrates the possibilities of the RSEc. The website is designed to help researchers and scientists explore the metadata of various scientific tools, with the final aim of improving findability.
WorkflowHub is a registry of computational workflows, agnostic to workflow systems, but with tighter integrations for Galaxy, Nextflow and Common Workflow Language. Assigns DOIs to FAIR Computational Workflow and packages workflows with their contextual using Bioschemas and the FAIR data packaging method RO-Crate.
A comprehensive registry of software and databases, facilitating researchers from across the spectrum of biological and biomedical science to find, understand, utilise and cite the resources they need in their day-to-day work.
| Tool or resource | Description | Related pages | Registry |
|---|---|---|---|
| bio.tools | A comprehensive registry of software and databases, facilitating researchers from across the spectrum of biological and biomedical science to find, understand, utilise and cite the resources they need in their day-to-day work. | Sources | Standards/Databases |
| Bioconda | Bioconda is a bioinformatics channel for the Conda package manager | Sources | Tool info Training |
| Galaxy | Galaxy is an open-source platform that allows researchers to analyze and share scientific data using interoperable APIs and various user-friendly web-based interfaces. Galaxy tools can be annotated with EDAM ontologies, bio.tools IDs and linked to OpenEBench, Conda packages and BioContainers. | ||
| RSEc Atlas | This static site web application demonstrates the possibilities of the RSEc. The website is designed to help researchers and scientists explore the metadata of various scientific tools, with the final aim of improving findability. | ||
| WorkflowHub | WorkflowHub is a registry of computational workflows, agnostic to workflow systems, but with tighter integrations for Galaxy, Nextflow and Common Workflow Language. Assigns DOIs to FAIR Computational Workflow and packages workflows with their contextual using Bioschemas and the FAIR data packaging method RO-Crate. | Sources |